PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01784_BGI-A2_v1.0
Common NameF383_31202
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 258aa    MW: 29688.4 Da    PI: 8.7548
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01784_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.2e-36211132103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d+ +++++sw en++sfvv+  +efak++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF+++
  Cotton_A_01784_BGI-A2_v1.0  21 FLTKTYQLVDDPLTDHIVSWGENETSFVVWRITEFAKNLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANE 94 
                                 9****************************************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                 +F+kg k+ll++i+r+k++
  Cotton_A_01784_BGI-A2_v1.0  95 NFRKGAKHLLSEIHRRKTH 113
                                 ****************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-5617110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3218110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MERSEELVLS VEPQNPVPAP FLTKTYQLVD DPLTDHIVSW GENETSFVVW RITEFAKNLL  60
PNYFKHNNFS SFVRQLNTYG FKKVVADRWE FANENFRKGA KHLLSEIHRR KTHRNHHDQQ  120
QPQQLFLKPE DSYGWMESPS PSPRGSSTDI LTALTQDNQR LRRKNYMLVS ELTHMKTLYN  180
DIIYFIQNHV KPVPYQQKAN TVGSNIIQLG PSSHVSGTET AETSVLGNSS SLTVPNNSNV  240
QLFGVPLIDN ERFAPLKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-221011220131Heat shock factor protein 1
5d5v_B1e-221011220131Heat shock factor protein 1
5d5v_D1e-221011220131Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486190.0KJ748619.1 Gossypium hirsutum HSF16 (HSF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485326.10.0PREDICTED: heat stress transcription factor B-4b-like
RefseqXP_012485327.10.0PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ10KX89e-80HFB4D_ORYSJ; Heat stress transcription factor B-4d
SwissprotQ9C6352e-79HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0B0N1360.0A0A0B0N136_G
STRINGPOPTR_0001s28040.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-80heat shock transcription factor B4